3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09197 Details: PFam ID : PF09197 PFam Domain Description : Rap1, DNA-binding Number of Sequence in 50% Dataset : 17 Number of Sequence in Full Dataset : 26 Average sequence length: 104.3 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF09197A4RE13_MAGO7_124_21387.5 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF09197Q96WQ7_CANGB_320_45196 Sequence based PCA Plot of the family - PF09197 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=19 Length=8Motif2 Start=10 Length=8Motif3 Start=1 Length=8Motif4 Start=51 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF09197
PFam Domain Description : Rap1, DNA-binding
Number of Sequence in 50% Dataset : 17
Number of Sequence in Full Dataset : 26
Average sequence length: 104.3
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER