3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01016

Details:

PFam ID : PF01016

PFam Domain Description : Ribosomal L27 protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 863

Average sequence length: 79.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01016	B9XSM2_9BACT_1_37	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01016	D3PHZ3_9MAXI_48_132	99.5

Sequence based PCA Plot of the family - PF01016 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=52 Length=8
Motif2 Start=32 Length=8
Motif3 Start=20 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay