3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02026

Details:

PFam ID : PF02026

PFam Domain Description : RyR domain

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 178

Average sequence length: 88.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02026	E5S0U8_TRISP_2362_2402	86.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02026	Q4T5B8_TETNG_826_923	100

Sequence based PCA Plot of the family - PF02026 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=47 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay