3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00974

Details:

PFam ID : PF00974

PFam Domain Description : Rhabdovirus spike glycoprotein

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 100

Average sequence length: 293.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00974	D6NLS1_9RHAB_1_160	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00974	Q3ZTJ8_SVCV_1_142	93.9

Sequence based PCA Plot of the family - PF00974 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=130 Length=8
Motif3 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay