3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00848

Details:

PFam ID : PF00848

PFam Domain Description : Ring hydroxylating alpha subunit (catalytic domain)

Number of Sequence in 50% Dataset : 327

Number of Sequence in Full Dataset : 1440

Average sequence length: 205.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00848	C0SA18_PARBP_251_451	98.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00848	C0SA18_PARBP_251_451	100

Sequence based PCA Plot of the family - PF00848 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=29 Length=18
Motif3 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay