3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02794

Details:

PFam ID : PF02794

PFam Domain Description : RTX toxin acyltransferase family

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 95

Average sequence length: 129.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02794	D4ECM4_AGGAC_1_92	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02794	B0SXS3_CAUSK_25_186	100

Sequence based PCA Plot of the family - PF02794 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=11
Motif2 Start=16 Length=8
Motif3 Start=7 Length=8
Motif4 Start=83 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay