3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13707

Details:

PFam ID : PF13707

PFam Domain Description : RloB-like protein

Number of Sequence in 50% Dataset : 163

Number of Sequence in Full Dataset : 233

Average sequence length: 176.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13707	C6XEU1_METSD_12_212	95.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13707	E6LLN3_9FIRM_16_119	100

Sequence based PCA Plot of the family - PF13707 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=103 Length=8
Motif2 Start=282 Length=11
Motif3 Start=198 Length=8
Motif4 Start=161 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay