3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13639

Details:

PFam ID : PF13639

PFam Domain Description : Ring finger domain

Number of Sequence in 50% Dataset : 429

Number of Sequence in Full Dataset : 5295

Average sequence length: 48.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13639	A7ELZ4_SCLS1_54_106	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13639	A7ELZ4_SCLS1_54_106	99.9

Sequence based PCA Plot of the family - PF13639 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=40 Length=8
Motif2 Start=19 Length=17
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay