3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03787

Details:

PFam ID : PF03787

PFam Domain Description : RAMP superfamily

Number of Sequence in 50% Dataset : 669

Number of Sequence in Full Dataset : 1151

Average sequence length: 234.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03787	D8DST8_PREBR_1_307	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03787	Q2JRT5_SYNJA_129_478	94.7

Sequence based PCA Plot of the family - PF03787 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=6 Length=8
Motif4 Start=337 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay