3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08284

Details:

PFam ID : PF08284

PFam Domain Description : Retroviral aspartyl protease

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 318

Average sequence length: 101.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08284	A0MEC4_ARATH_1_65	85.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08284	Q75KD2_ORYSJ_306_336	99.6

Sequence based PCA Plot of the family - PF08284 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=17
Motif2 Start=1 Length=8
Motif3 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay