3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09456

Details:

PFam ID : PF09456

PFam Domain Description : RcsC Alpha-Beta-Loop (ABL)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 53

Average sequence length: 90.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09456	B2Q033_PROST_684_776	9.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09456	B2Q033_PROST_684_776	100

Sequence based PCA Plot of the family - PF09456 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=63 Length=8
Motif2 Start=1 Length=18
Motif3 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay