3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05140

Details:

PFam ID : PF05140

PFam Domain Description : ResB-like family

Number of Sequence in 50% Dataset : 223

Number of Sequence in Full Dataset : 801

Average sequence length: 288.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05140	Q1PZJ2_9BACT_506_578	76.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05140	B2UNM4_AKKM8_101_240	100

Sequence based PCA Plot of the family - PF05140 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay