3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07499

Details:

PFam ID : PF07499

PFam Domain Description : RuvA, C-terminal domain

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 1095

Average sequence length: 47.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07499	B9GU04_POPTR_1194_1227	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07499	D2Z3E4_9BACT_150_199	99.5

Sequence based PCA Plot of the family - PF07499 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=8 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay