3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03838

Details:

PFam ID : PF03838

PFam Domain Description : Recombination protein U

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 256

Average sequence length: 155.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03838	C2X4N3_BACCE_1_83	76.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03838	F0V3L9_9MOLU_8_174	100

Sequence based PCA Plot of the family - PF03838 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=75 Length=8
Motif3 Start=1 Length=8
Motif4 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay