3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07634

Details:

PFam ID : PF07634

PFam Domain Description : RtxA repeat

Number of Sequence in 50% Dataset : 119

Number of Sequence in Full Dataset : 547

Average sequence length: 18.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07634	B8NNU9_ASPFN_48_141	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07634	F0V1C5_9VIBR_798_816	59

Sequence based PCA Plot of the family - PF07634 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay