3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06956

Details:

PFam ID : PF06956

PFam Domain Description : Regulator of RNA terminal phosphate cyclase

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 69

Average sequence length: 178.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06956	A9RNQ8_PHYPA_231_283	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06956	Q2SB11_HAHCH_6_191	100

Sequence based PCA Plot of the family - PF06956 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=104 Length=17
Motif2 Start=20 Length=8
Motif3 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay