3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01249

Details:

PFam ID : PF01249

PFam Domain Description : Ribosomal protein S21e

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 149

Average sequence length: 77.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01249	O65878_PEA_19_72	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01249	E2C359_9HYME_1_37	99.3

Sequence based PCA Plot of the family - PF01249 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=28 Length=8
Motif3 Start=52 Length=8
Motif4 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay