3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03353

Details:

PFam ID : PF03353

PFam Domain Description : Ras-mediated vulval-induction antagonist

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 67

Average sequence length: 267.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03353	O44809_CAEEL_28_178	85.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03353	A8XW07_CAEBR_41_397	100

Sequence based PCA Plot of the family - PF03353 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=272 Length=8
Motif3 Start=34 Length=8
Motif4 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay