3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10404

Details:

PFam ID : PF10404

PFam Domain Description : Rad4 beta-hairpin domain 2

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 165

Average sequence length: 61.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10404	C5M2P4_CANTT_329_392	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10404	C5M2P4_CANTT_329_392	100

Sequence based PCA Plot of the family - PF10404 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=115 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay