3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02009

Details:

PFam ID : PF02009

PFam Domain Description : Rifin/stevor family

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 351

Average sequence length: 293.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02009	B8BUB0_THAPS_225_277	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02009	Q8I1V5_PLAF7_25_376	100

Sequence based PCA Plot of the family - PF02009 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=87 Length=8
Motif3 Start=21 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay