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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08621
Details:

PFam ID : PF08621

PFam Domain Description : RPAP1-like, N-terminal

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 119

Average sequence length: 48.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08621B0CV15_LACBS_93_14138.4
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08621F0W007_9STRA_119_167100
Sequence based PCA Plot of the family - PF08621 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay