3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01512

Details:

PFam ID : PF01512

PFam Domain Description : Respiratory-chain NADH dehydrogenase 51 Kd subunit

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 1473

Average sequence length: 160.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01512	C0QLI3_DESAH_132_258	59.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01512	B7XR47_ENTBH_1_100	100

Sequence based PCA Plot of the family - PF01512 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=111 Length=11
Motif2 Start=21 Length=18
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay