3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11626

Details:

PFam ID : PF11626

PFam Domain Description : Rap1 - C terminal domain

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 40

Average sequence length: 73.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11626	A6SP73_BOTFB_852_894	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11626	Q96VU6_SACCA_720_820	100

Sequence based PCA Plot of the family - PF11626 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay