3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01386

Details:

PFam ID : PF01386

PFam Domain Description : Ribosomal L25p family

Number of Sequence in 50% Dataset : 170

Number of Sequence in Full Dataset : 962

Average sequence length: 87.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01386	CTC_BACCL_5_59	86.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01386	B7FST1_PHATC_58_163	100

Sequence based PCA Plot of the family - PF01386 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=27
Motif2 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay