3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12328

Details:

PFam ID : PF12328

PFam Domain Description : Rpp20 subunit of nuclear RNase MRP and P

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 46

Average sequence length: 138.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12328	A1CF93_ASPCL_198_241	15

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12328	B8M6X4_TALSN_63_260	100

Sequence based PCA Plot of the family - PF12328 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay