3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08428

Details:

PFam ID : PF08428

PFam Domain Description : Rib/alpha-like repeat

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 416

Average sequence length: 68.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08428	D8PRA0_SCHCM_9_63	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08428	D8FQP9_LACDE_396_456	100

Sequence based PCA Plot of the family - PF08428 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=29 Length=8
Motif4 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay