3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01246

Details:

PFam ID : PF01246

PFam Domain Description : Ribosomal protein L24e

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 297

Average sequence length: 66.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01246	B2CP08_OSTNU_1_30	26.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01246	Q4Q1W6_LEIMA_1_75	100

Sequence based PCA Plot of the family - PF01246 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=8
Motif2 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay