3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00617

Details:

PFam ID : PF00617

PFam Domain Description : RasGEF domain

Number of Sequence in 50% Dataset : 326

Number of Sequence in Full Dataset : 861

Average sequence length: 181.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00617	Q234T9_TETTH_440_634	83.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00617	E3KF19_PUCGT_1948_2335	100

Sequence based PCA Plot of the family - PF00617 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=3 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay