3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00444

Details:

PFam ID : PF00444

PFam Domain Description : Ribosomal protein L36

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 537

Average sequence length: 38.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00444	B6KQB4_TOXGO_1_39	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00444	B6KQB4_TOXGO_1_39	100

Sequence based PCA Plot of the family - PF00444 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay