3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09816

Details:

PFam ID : PF09816

PFam Domain Description : RNA polymerase II transcription elongation factor

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 111

Average sequence length: 106.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09816	B6H411_PENCW_17_124	78.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09816	B9W9Q8_CANDC_8_129	100

Sequence based PCA Plot of the family - PF09816 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=90 Length=8
Motif2 Start=1 Length=8
Motif3 Start=78 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay