3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05914

Details:

PFam ID : PF05914

PFam Domain Description : RIB43A

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 82

Average sequence length: 308.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05914	A4VDZ5_TETTH_11_134	80.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05914	A1L1R9_DANRE_1_384	100

Sequence based PCA Plot of the family - PF05914 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=141 Length=8
Motif3 Start=276 Length=8
Motif4 Start=375 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay