3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05443

Details:

PFam ID : PF05443

PFam Domain Description : ROS/MUCR transcriptional regulator protein

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 380

Average sequence length: 124.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05443	MTRB_METKA_2_98	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05443	A9HR91_GLUDA_45_213	100

Sequence based PCA Plot of the family - PF05443 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=147 Length=8
Motif2 Start=13 Length=8
Motif3 Start=112 Length=8
Motif4 Start=131 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay