3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01655

Details:

PFam ID : PF01655

PFam Domain Description : Ribosomal protein L32

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 272

Average sequence length: 106.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01655	B5DSF4_DROPS_15_48	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01655	C7DIU4_9EURY_4_124	100

Sequence based PCA Plot of the family - PF01655 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=97 Length=8
Motif2 Start=74 Length=8
Motif3 Start=8 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay