3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05327

Details:

PFam ID : PF05327

PFam Domain Description : RNA polymerase I specific transcription initiation factor RRN3

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 197

Average sequence length: 406.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05327	A8IX25_CHLRE_5_249	88.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05327	C4M4Z3_ENTHI_3_221	100

Sequence based PCA Plot of the family - PF05327 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=43 Length=8
Motif3 Start=201 Length=8
Motif4 Start=364 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay