3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10257

Details:

PFam ID : PF10257

PFam Domain Description : Retinoic acid induced 16-like protein

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 131

Average sequence length: 325.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10257	A4RNV3_MAGO7_83_311	69.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10257	F1MLL5_BOVIN_1_168	99.2

Sequence based PCA Plot of the family - PF10257 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=310 Length=8
Motif3 Start=42 Length=8
Motif4 Start=185 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay