3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00398

Details:

PFam ID : PF00398

PFam Domain Description : Ribosomal RNA adenine dimethylase

Number of Sequence in 50% Dataset : 356

Number of Sequence in Full Dataset : 2036

Average sequence length: 235.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00398	D2EGJ4_9EURY_9_156	93.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00398	E7LFF7_TRYCR_86_455	99.9

Sequence based PCA Plot of the family - PF00398 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=30 Length=17
Motif3 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay