3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06815

Details:

PFam ID : PF06815

PFam Domain Description : Reverse transcriptase connection domain

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 733

Average sequence length: 88.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06815	C4M325_ENTHI_67_341	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06815	Q84809_9RETR_420_522	96.9

Sequence based PCA Plot of the family - PF06815 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=8
Motif2 Start=14 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay