3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14204

Details:

PFam ID : PF14204

PFam Domain Description : Ribosomal L18 C-terminal region

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 255

Average sequence length: 86.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14204	F0TB94_METSL_138_191	46.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14204	A0CLN5_PARTE_196_298	100

Sequence based PCA Plot of the family - PF14204 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=35 Length=8
Motif2 Start=10 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay