3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02033

Details:

PFam ID : PF02033

PFam Domain Description : Ribosome-binding factor A

Number of Sequence in 50% Dataset : 165

Number of Sequence in Full Dataset : 1115

Average sequence length: 104.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02033	Q7XYI2_BIGNA_66_183	92.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02033	Q7XYI2_BIGNA_66_183	100

Sequence based PCA Plot of the family - PF02033 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=18
Motif2 Start=1 Length=14
Motif3 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay