3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01667

Details:

PFam ID : PF01667

PFam Domain Description : Ribosomal protein S27

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 174

Average sequence length: 53.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01667	D6PHY9_9VIRU_34_72	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01667	A0RY94_CENSY_11_65	99.4

Sequence based PCA Plot of the family - PF01667 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=36 Length=8
Motif2 Start=3 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay