3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08519

Details:

PFam ID : PF08519

PFam Domain Description : Replication factor RFC1 C terminal domain

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 162

Average sequence length: 147.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08519	P78622_EMENI_808_866	78.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08519	Q385K3_9TRYP_307_482	100

Sequence based PCA Plot of the family - PF08519 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8
Motif4 Start=148 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay