3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00239

Details:

PFam ID : PF00239

PFam Domain Description : Resolvase, N terminal domain

Number of Sequence in 50% Dataset : 743

Number of Sequence in Full Dataset : 4001

Average sequence length: 133.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00239	A4XCC7_SALTO_4_86	84.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00239	C3BUJ7_9BACI_1_45	99.8

Sequence based PCA Plot of the family - PF00239 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=47 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay