3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00346

Details:

PFam ID : PF00346

PFam Domain Description : Respiratory-chain NADH dehydrogenase, 49 Kd subunit

Number of Sequence in 50% Dataset : 149

Number of Sequence in Full Dataset : 1654

Average sequence length: 186.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00346	B0DTQ7_LACBS_1_100	82.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00346	A8A9X2_IGNH4_444_540	99.8

Sequence based PCA Plot of the family - PF00346 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay