3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10305

Details:

PFam ID : PF10305

PFam Domain Description : RNA pol II promoter Fmp27 protein domain

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 73

Average sequence length: 100.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10305	D6RMI2_COPC7_986_1091	84

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10305	D6RMI2_COPC7_986_1091	100

Sequence based PCA Plot of the family - PF10305 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=76 Length=8
Motif2 Start=1 Length=8
Motif3 Start=11 Length=8
Motif4 Start=96 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay