3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00566

Details:

PFam ID : PF00566

PFam Domain Description : Rab-GTPase-TBC domain

Number of Sequence in 50% Dataset : 804

Number of Sequence in Full Dataset : 2506

Average sequence length: 196.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00566	Q4SJ91_TETNG_84_371	97.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00566	Q4N7J6_THEPA_652_797	99.8

Sequence based PCA Plot of the family - PF00566 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=129 Length=8
Motif2 Start=62 Length=8
Motif3 Start=148 Length=8
Motif4 Start=230 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay