3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14259

Details:

PFam ID : PF14259

PFam Domain Description : RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)

Number of Sequence in 50% Dataset : 986

Number of Sequence in Full Dataset : 2653

Average sequence length: 69.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14259	D8TLU3_VOLCA_342_388	68.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14259	F2UED1_9EUKA_342_404	99.6

Sequence based PCA Plot of the family - PF14259 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=20
Motif2 Start=51 Length=8
Motif3 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay