3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03836

Details:

PFam ID : PF03836

PFam Domain Description : RasGAP C-terminus

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 132

Average sequence length: 131.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03836	E2L861_MONPE_99_182	30.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03836	E7R532_PICAD_1353_1500	99.2

Sequence based PCA Plot of the family - PF03836 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=33 Length=8
Motif4 Start=132 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay