3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01402

Details:

PFam ID : PF01402

PFam Domain Description : Ribbon-helix-helix protein, copG family

Number of Sequence in 50% Dataset : 469

Number of Sequence in Full Dataset : 1739

Average sequence length: 38.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01402	C4L5I6_EXISA_7_45	50.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01402	B4F339_COREQ_25_63	92.1

Sequence based PCA Plot of the family - PF01402 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay