3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01858

Details:

PFam ID : PF01858

PFam Domain Description : Retinoblastoma-associated protein A domain

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 110

Average sequence length: 183.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01858	Q2PMD0_HUMAN_2_47	77.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01858	C4Q3V9_SCHMA_389_611	100

Sequence based PCA Plot of the family - PF01858 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=171 Length=8
Motif3 Start=155 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay