3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04641

Details:

PFam ID : PF04641

PFam Domain Description : Replication termination factor 2

Number of Sequence in 50% Dataset : 109

Number of Sequence in Full Dataset : 306

Average sequence length: 224.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04641	D3YZQ4_MOUSE_14_173	90.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04641	NOSIP_DICDI_201_327	100

Sequence based PCA Plot of the family - PF04641 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=53 Length=8
Motif2 Start=39 Length=8
Motif3 Start=183 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay